YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19698549
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLSVAVAV ALFLVNPARA SVSLRNHDAY DYFAIHLDPS VSPVQVAQML GAQYEGQVGE  60
   61 LADHHTFSIS KELGVSVDRT LEDLRQRRRR RRRRRSLPNV EDLAVGDALD GILWSQKLTL 120
  121 RPPMSKRAPP LPPPPQAKVR QSKPQDDQDR DYNATRKLNE IVSELEINDP IFTQQWHLFN 180
  181 VKQPGHDLNV TGLWMEGITG NGAISAIVDD GLDMYSNDLK NNYFAEGSYD YNDDVDEPRP 240
  241 RLYDDKHGTR CAGEVAGVRN DVCGVGVAYD SKVAGIRILS KPVSDEDEAA SINYKYQDNQ 300
  301 VYSCSWGPVD DGTTMDAPGI LVQRAIVNGI QKGRGGKGSV YVFAAGNGAL HEDNCNFDGY 360
  361 TNSIYSVTVG AIDHNDKHPY YSEPCSAQLV VTYSSGGGNA IHTTDVGVNT CTTKHGGTSA 420
  421 AGPLVVGVVA LALSVRPELT WRDVQYILLE TAIPVNLNES YWQDTATGKK FSHDYGYGKV 480
  481 DAYSAVHLAM TWKLVKPQAW LHSPWLQVYA DIPQGDKGLA SSFEVTKELL VRNNVERLEH 540
  541 VTLTMNINHT RRGDLSVELR SPTGAVSYLS TTRKLDDLRA GYVDWTFMSL VHWGESGIGK 600
  601 WTVIVKDTIV NDFKGVFIDW QLSLWGEAID ADIQGLHPLP DEHDHDHNTE LAPVATTTII 660
  661 SSATSSKPTA SVVPTDHIDR PVNTKPTGTQ SPSQPSASSQ PTPTSTSDSF LPSFFPTFGV 720
  721 SKRTQVWIYG SLTLILIFCS TLGTYFLIQR RKRIRSNLHD DYEFEMIDDE SDETAPLSTG 780
  781 GHVAGARTGR KQRRKGGELY DAFAGGSDEE LLSDGESESG SGEEPYRDED ERQDGGGVSE 840
  841 TT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle