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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50730464
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPPPFGDRD PLHQLSCSRE FSAESPTRLL GFARDCHQYA FATWTESKTI LKESLNSSEY  60
   61 QSKLIKKMML TFYWILALLI TGTEVRGINL PGCSHVKPQV WYRAISDEEF VLQCALPDKD 120
  121 ATNIYNNSVL KQHEVKWFWH QKDKGHLKAV EESFNVTLQG NALWFKPVRE NASGIYICMI 180
  181 REKIPCLKIV LEVQTKAKAK CSGYGTNTLY LLAGNGNSIA CPGRKCYSHI NKTDVRWYKP 240
  241 TACGYEIYLK ITMEETLEYM YVITTSLKHY SMDNENSSDS RSHWPCLLGR NTTVQRCGIA 300
  301 ASILYSEVDG LQLSLLQSKT TIHPPNILYP SSVAILEAEL GKPLELECRV QFGFERGTQR 360
  361 VIWKRDNKEN LNEKLKQFET IETKETSVCP RYLKGHVLRH VAKLEEVTER DLKSDFICFA 420
  421 QNSVGNATAV IQLKKKQRVF FLYILCSAIS ILFAFLLCTA FIYQHWIEIV LMYRSYVAHN 480
  481 ETTGDGKEFD AFVSYAKTDA SESDSAFISE EKFALEILPD VLENKYGYKL CILERDILPG 540
  541 GAYTDEVVTA IRQSRRTIII LSPAYVSGPN IFELQAAVNC ALEDKKIKLV LIKFQAFQEP 600
  601 ETLPPVVKKA LRILPVITWK PSISPAPNKK FWKYMHYHMP SDAVSGVYLG LRNLQNWYLH 660
  661 INSRSICHTR SSEDTRLQIF TVDYNNVQIP YEVTLWILLA SLAKIGFHLY HRLPRLMPES 720
  721 CILIAIGALV GAIIFGTDHK SPPVMNTSIY FLYLLPPIVL EEGYFMPTRP FFENLGSILW 780
  781 WSVLGSLLNS FGIGLSLYGI CQIEAFGLTD LNLLQNLLFG SMISAVDPVA ALAVFEEASV 840
  841 NEQLHMMIFG ESLLNDGITV ERIINNTNMV NLSDLKYANG IIFYFLLRGC EGALMTRFTH 900
  901 NVSAIEPLLV FMFSYLSYLC AEILYISGIM GCILIAIGAL VGAIIFGTDH KSPPVMNTSI 960
  961 YFLYLLPPIV LEEGYFMPTR PFFENLGSIL WWSVLGSLLN SFGIGLSLYG ICQIEAFGLT1020
 1021 DLNLLQNLLF GSMISAVDPV AALAVFEEAS VNEQLHMMIF GESLLNDGIT VVLYNIFIAF1080
 1081 TQMHRYEEIE SIDILAGFAR FFVVGLGGML FGIVFGFVSA LMTRFTHNVS AIEPLLVFMF1140
 1141 SYLSYLCAEI LYISGIMAMT ACAVTMKKYV EENVCQNSYT TIKYFMKMLS SVSETLIFVF1200
 1201 MGVSTVGKNH EWNWAFICFT LLFCLIWRTL SKSAFADNLV CISERNLLVQ RHLGVFALFY1260
 1261 ISNKFRTYPL TFKDQLIISY SGLRGASSFS LAFLLPGKLF PRKKLFITAT LVVIYFTVFI1320
 1321 QGITIGPLVK YLDVKKTNKK ESINEKIHMR LMDHLKAGIE DICGHWSHYQ LRDKFKKFDN1380
 1381 KYLKKILIRE HQPKSSIVSL YKKMEIKLAI EMAENAMKIS ESSTASLQRC RNRRDHRLSP1440
 1441 AEVESMRDVL AHNLYQVRQR APSYNRHNLP SNTSEKQAQE ILIRRQHSLR QSCRKGNSLP1500
 1501 WGRPVNATSM RYLSLPQDHS GQPTRRKARH VTFTAPQVGR SRSDTPKVIK AP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle