YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49648012, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	138	0.89
Transmembrane Helix	139	173	0.77
Non-Cytoplasmic	174	207	0.51
Transmembrane Helix	208	230	0.75
Cytoplasmic	231	239	0.62
Transmembrane Helix	240	261	0.92
Non-Cytoplasmic	262	267	0.56
Transmembrane Helix	268	289	0.69
Cytoplasmic	290	304	0.77
Transmembrane Helix	305	326	0.85
Non-Cytoplasmic	327	342	0.80
Transmembrane Helix	343	367	0.68
Cytoplasmic	368	378	0.56
Transmembrane Helix	379	401	0.88
Non-Cytoplasmic	402	461	0.75
Transmembrane Helix	462	483	0.92
Cytoplasmic	484	515	0.74
Transmembrane Helix	516	536	0.95
Non-Cytoplasmic	537	541	0.68
Transmembrane Helix	542	565	0.89
Cytoplasmic	566	623	0.39
Transmembrane Helix	624	644	0.76
Non-Cytoplasmic	645	667	0.53
Transmembrane Helix	668	687	0.60
Cytoplasmic	688	693	0.36
Transmembrane Helix	694	714	0.94
Non-Cytoplasmic	715	739	0.40
Transmembrane Helix	740	759	0.52
Cytoplasmic	760	769	0.83
Transmembrane Helix	770	793	0.86
Non-Cytoplasmic	794	836	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQYSRHAFD TDSDSDTELT PIYIDDRYSS MVSNDSRAGL LRRGGDLERD AESEKTREEK  60
   61 EEELRNHSFS KSRDKTRETV ADATLESSSC VDSQYDTVET TSIFSVGRKK AINSPYPEVR 120
  121 AAVPATDDPL MPQNTPRMWV IGIFLVTICS GLNILFTLHW PAFVISSFFA AMVAWPLGRI 180
  181 WDQFVPNWRI PLTNIYLNNS PFNIKEHCLI IVMANVSYGT GVSYVPVIVL TMKHRYNNTY 240
  241 FGWGFSIVSS ICVQCLGYGM AGICRRILVY PASLIWPSNL VTTTFLTNIH MNVNHTADGW 300
  301 KISRLRFFLI VFSAYFVWNW LPGYLAPFLS NFAFVTYAAP DNVIVNQIFG SSSGLGLIPI 360
  361 NFDWNVIAGY IGSPLVPPFF SIGNVAAGVV VIFWIITPIL HYSNAWYGRY LPMSDSNSYD 420
  421 RFQRTYDAER VLKPLVKGGK KKFELDVEKY KEYSPLYLST TFALSYGVSF AAITSTVVHT 480
  481 ILFHGKEIMY YWKHSRKEPE DVHMELMRKY PEVPEWWYAL VLAICFALAC VTVSVWETDL 540
  541 PIWALIIALL IAGGLLIPAG MIAALTNVTM GLNVLTEFVV GYILPGRPVG MMFFKTFGYI 600
  601 SNAQALNFLV DLKLGHYLKL APRVMFCAQI LATTWGSICQ LAVVEWAQMA IPDLCEESQK 660
  661 TNFSCPQVQV FYSASVIWGL VGPGRIFGEG QLYHGLLWMF LVGAALPFFS WLWLKRHPNS 720
  721 RLKFIHWPVF FNGPSQIPPA TPYNYASWCV VGYIFNWLIK RRWFNWWAKY NYTLSAGLDV 780
  781 GMAVSAAVIF VSLQLPNINP PSWWGTNIFT PTMDIQGNAF QEVLKEGESF GMKTWK