YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49646393, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENQPLLGA PTRGPLKTHV IGPSASSNAS SSATARKRPP VDQSTPPQLN HRIGPQRTSR  60
   61 TTQKLKLLPE EPDRDDDDES GREVYSQVTR IKDPPARKDA ERLGKAHRDL LPRVTAYCTA 120
  121 SSYRMRDITK YLQSRKHRRA HPKLFDECLY TPYSYRDQEI SAQEDFIRID DEGGDIDVVI 180
  181 TRTDVFLFEY GVVVLWGFTE AEEKRFLKEL ARFETEKLAD EDVQVEEFNY YITQSYQPRI 240
  241 YNDFITLRDG RNYMMKLSIS HAIAQSAKIS LFEELVENTI EDTQDFPQEI AVTGKIDMDR 300
  301 SDIIKSIGEL FILRININLH GSILDSPELM WAEPHLEPIY QATRGYLEIN QRVSLLNNRL 360
  361 EVISDLLSML KEQLGHSHGE YLEFIVIVLI AVEVVVAILN VIVDLTAENL

Type	Start	End	Confidence
Non-Cytoplasmic	1	383	0.78
Transmembrane Helix	384	403	0.62
Cytoplasmic	404	410	0.38