YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44916996, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRAFLTTSA ILASVVLANA RLPGFSSADS HSLFKRISSG CSTSGAASCS SGSVGNTCCT  60
   61 ESPGGLLLQT QFWDTNPSTG PSNSWTIHGL WPDNCDGTFE ENCDSSRDYT NIAGLLQAQG 120
  121 ASDTLSFMQE FWVDINGQNE QFWEHEWATH GTCMSTLEPS CLPSGSPTGA EAVAFYQTVV 180
  181 KLFKSLPTYD WLSQEGITPS SSKTYTLSDF TSALNKASGF TPALNCNGNT VNQISWYFHL 240
  241 KGSIIDGNFV AIDTPASGSC PSSGLKYPLK SGSSTSTSAG TSPTGSPGGL PSKATISALT 300
  301 SSGSSLGGLL SAGKWSTQTP GTYTISGSSN SFTLTSSKGA CAVTSGEFAC GGSSSSTFSA 360
  361 VTSGSNLLLA FQGSTAFSSD ASPSGQAQET VFTGSSHSVQ FSLTLIST

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	408	0.99