YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KASM_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.30
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSNLRRHL SASRLRLNRF ISTSSSYHSH RRVVVTGLGM VTPLGRGVET TWRRLIDGEC  60
   61 GIRGLTLDDL KMKSFDEETK LYTFDQLSSK VAAFVPYGSN PGEFDEALWL NSKAVANFIG 120
  121 YAVCAADEAL RDAEWLPTEE EEKERTGVSI GGGIGSICDI VEAAQLICEK RLRRLSPFFI 180
  181 PKILVNMASG HVSMKYGFQG PNHAAVTACA TGAHSIGDAT RMIQFGDADV MVAGGTESSI 240
  241 DALSVAGFSR SRALSTKFNS SPQEASRPFD CDRDGFVIGE GSGVIVLEEY EHAKRRGAKI 300
  301 YAELCGYGMS GDAHHITQPP EDGKGAVLAM TRALRQSGLC PNQIDYVNAH ATSTPIGDAV 360
  361 EARAIKTVFS EHATSGTLAF SSTKGATGHL LGAAGAVEAI FSILAIHHGV APMTLNVKNP 420
  421 DPIFDKRFMP LTTSKKMLVR TAMSNSFGFG GTNASLLFAS I

Type	Start	End	Confidence
Signal Peptide	1	47	0.46
N-region	1	38
H-region	39	44
C-region	45	47
Cleavage Site	47	48
Non-Cytoplasmic	48	387	0.90
Transmembrane Helix	388	408	0.59
Cytoplasmic	409	436	0.57
Transmembrane Helix	437	458	0.50
Non-Cytoplasmic	459	461	0.70