YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8978356
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTLTSVAFA AAVNIRFRSF HRENIKTTIT TLPKWQKRLC FSSTEDSHRF RIAKCLGNDE  60
   61 NSNRDDSIGE NGETHKSSVV KTATFEEEDE ETSKSSSTTS SSNEFGSDKT SMPSTIDPTY 120
  121 SSFQIDSFKL MELLGPEKVD PADVKLIKDK LFGYSTFWVT KEEPFGDLGE GILFLGNLRG 180
  181 KKEDVFAKLQ RKLVEVASDK YNLFMIEEPN SEGPDPRGGA RVSFGLLRKE VSEPGPTTLW 240
  241 QYVIALILFL LTIGSSVELG IASQINRLPP EVVKYFTDPN AVEPPDMELL YPFVDAALPL 300
  301 AYGVLGILLF HELGHFLAAV PKKVKLSIPY FIPNITLGSF GAITQFKSIL PDRSTKVDIS 360
  361 LAGPFAGAAL SVSMFAVGLF LSTEPDAAND LVQVPSMLFQ GSLLLGLISR ATLGYACGLT 420
  421 TTAFNMLPVG CLDGGRAVQG AFGKNALVTF GLSTYVMLGL RVLGGPLALP WGLYVLICQR 480
  481 TPEKPCLNDV TEVGTWRKAL VGIALILVVL TLLPVWDELA EEVGIGLVTT F

Type	Start	End	Confidence
Cytoplasmic	1	237	0.87
Transmembrane Helix	238	262	0.84
Non-Cytoplasmic	263	295	0.82
Transmembrane Helix	296	317	0.83
Cytoplasmic	318	325	0.78
Transmembrane Helix	326	349	0.75
Non-Cytoplasmic	350	360	0.72
Transmembrane Helix	361	382	0.92
Cytoplasmic	383	397	0.70
Transmembrane Helix	398	424	0.72
Non-Cytoplasmic	425	456	0.74
Transmembrane Helix	457	478	0.82
Cytoplasmic	479	495	0.84
Transmembrane Helix	496	516	0.88
Non-Cytoplasmic	517	531	0.82