YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49656816, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDHDDTIP LLSDSIPENP IRLPEQELQR KESAQPAVSK NLQANRSISK INQSPKIGLQ  60
   61 RTSRTTQKLK LLPEDPPNLA DENDEEVYSQ VTRIKDTPAR KDAETLGKLQ RDLLPRVTAY 120
  121 CTCGSYKMKD LLRWLKDRKR IHNTNPKLFD ECLYTPFTYK DWRSEHVSQD DQHHFIRLAD 180
  181 EGGEIDIGKR NDIFIFEYGV IIMWGYTPKE EAAFLEDLAK FESEKLSAED IQVEEFNYYI 240
  241 TKSYQPRIYN DFITIRDDSN YMLKLSISHA LAQSVKISLF EELVDNTIED TEDIPQQIAQ 300
  301 TGKVEMTKDE IMKSIGELFI LRININLHGS VLDSPELMWA EPHLEPIYQA TRGYLEINQR 360
  361 VELLNQRLEV ISDLLQMLKE QLGHSHEENL EFIVVVLVAV EVLVSIINIM IDILTY

Type	Start	End	Confidence
Non-Cytoplasmic	1	391	0.85
Transmembrane Helix	392	414	0.59
Cytoplasmic	415	416	0.47