YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50424667, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.84
Transmembrane Helix	70	92	0.90
Non-Cytoplasmic	93	102	0.65
Transmembrane Helix	103	122	0.93
Cytoplasmic	123	136	0.66
Transmembrane Helix	137	158	0.72
Non-Cytoplasmic	159	231	0.64
Transmembrane Helix	232	251	0.62
Cytoplasmic	252	260	0.47
Transmembrane Helix	261	283	0.81
Non-Cytoplasmic	284	288	0.58
Transmembrane Helix	289	311	0.78
Cytoplasmic	312	341	0.77
Transmembrane Helix	342	363	0.72
Non-Cytoplasmic	364	380	0.85
Transmembrane Helix	381	402	0.88
Cytoplasmic	403	430	0.87
Transmembrane Helix	431	448	0.83
Non-Cytoplasmic	449	468	0.74
Transmembrane Helix	469	487	0.94
Cytoplasmic	488	502	0.75
Transmembrane Helix	503	525	0.82
Non-Cytoplasmic	526	535	0.84
Transmembrane Helix	536	558	0.89
Cytoplasmic	559	566	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHEEHHGMK SGEHEPTKSN TKEVVATPHV EHHQHGMPIL QTELLPEERI FWENYDTTTY  60
   61 FTVKSDHKAA LYWHIGLTLM SFVFLYPICL VLNNVGSNWY YPLLFVHSAS VLVGLISFSV 120
  121 FVKSIPDLYP NNAYNKMSVI LGISTTAHVI FAIFNFGYKA ATNKDSIAAD YFTISDEESQ 180
  181 ETCASPSATL YDTSRDSSNS IERGGSMDAN LKTSLDSMFP PKSCGNRFLK KVTGIPVVTT 240
  241 MVNFFGKFSV YIFNLLNWCQ FFYFLVYLPT AVATFGCFGQ GSFVFNLLAH FIKGGVFFSL 300
  301 GLLYLARYCG AFTNKGWAWN HKFIKNYELK LGRWNRIQGK GLCTMEMIES SLILFYGCTN 360
  361 IFMEHLANPG GEWSTKDLQH ASIAFIYIGC GLCGVLTEFK LASWRFEKSI NNFEKFNDQS 420
  421 FSSKIIKATP GFSPNPFPIL TIYWTGVLMS QHAQASMLST DIHKQWGNLF MLGTVFRFIT 480
  481 YLLLLILPAT RELTKPLRPI SELLVSFALL CGGLIFMESC DPIVYAFEYR GFTSMFTLNI 540
  541 SLGIVALLMS WVMSVFAFKD WLLKRA