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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|8843813
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLLKSSPG RRRGGDVESG KSEHADSDSD TFYIPSKNAS IERLQQWRKA ALVLNASRRF  60
   61 RYTLDLKKEQ ETREMRQKIR SHAHALLAAN RFMDMGRESG VEKTTGPATP AGDFGITPEQ 120
  121 LVIMSKDHNS GALEQYGGTQ GLANLLKTNP EKGISGDDDD LLKRKTIYGS NTYPRKKGKG 180
  181 FLRFLWDACH DLTLIILMVA AVASLALGIK TEGIKEGWYD GGSIAFAVIL VIVVTAVSDY 240
  241 KQSLQFQNLN DEKRNIHLEV LRGGRRVEIS IYDIVVGDVI PLNIGNQVPA DGVLISGHSL 300
  301 ALDESSMTGE SKIVNKDANK DPFLMSGCKV ADGNGSMLVT GVGVNTEWGL LMASISEDNG 360
  361 EETPLQVRLN GVATFIGSIG LAVAAAVLVI LLTRYFTGHT KDNNGGPQFV KGKTKVGHVI 420
  421 DDVVKVLTVA VCFLVNNLSL IGIRDPAVTI VVVAVPEGLP LAVTLTLAYS MRKMMADKAL 480
  481 VRRLSACETM GSATTICSDK TGTLTLNQMT VVESYAGGKK TDTEQLPATI TSLVVEGISQ 540
  541 NTTGSIFVPE GGGDLEYSGS PTEKAILGWG VKLGMNFETA RSQSSILHAF PFNSEKKRGG 600
  601 VAVKTADGEV HVHWKGASEI VLASCRSYID EDGNVAPMTD DKASFFKNGI NDMAGRTLRC 660
  661 VALAFRTYEA EKVPTGEELS KWVLPEDDLI LLAIVGIKDP CRPGVKDSVV LCQNAGVKVR 720
  721 MVTGDNVQTA RAIALECGIL SSDADLSEPT LIEGKSFREM TDAERDKISD KISVMGRSSP 780
  781 NDKLLLVQSL RRQGHVVAVT GDGTNDAPAL HEADIGLAMG IAGTEVAKES SDIIILDDNF 840
  841 ASVVKVVRWG RSVYANIQKF IQFQLTVNVA ALVINVVAAI SSGDVPLTAV QLLWVNLIMD 900
  901 TLGALALATE PPTDHLMGRP PVGRKEPLIT NIMWRNLLIQ AIYQVSVLLT LNFRGISILG 960
  961 LEHEVHEHAT RVKNTIIFNA FVLCQAFNEF NARKPDEKNI FKGVIKNRLF MGIIVITLVL1020
 1021 QVIIVEFLGK FASTTKLNWK QWLICVGIGV ISWPLALVGK FIPVPAAPIS NKLKVLKFWG1080
 1081 KKKNSSGEGN SNLQLVIIN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle