YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50424333, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.68
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYIYLISAA LGLIGGVSGI DCGVKELKEY DFESIKGIHS VTTLKDTPPT QTNVTWYIGI  60
   61 CDTISEKIDH CPKNSDLCGI TLINLEKNSN KDAVVSEIVG FNTNLQKQYK PFTKDGDNNE 120
  121 DGITIVYKGA NWGDNLVDAE LRFVCASSSD KDKDLDKFQL HQWDDKRLKV SVKTKAACIT 180
  181 DKKDKKKPDN KKDNKKGNDK DDNGESWGWF TWIFIFLVLF LSIYIVGGAW FQYSKGNAID 240
  241 FQSALREVLE NFVSLLKGLP SFVREIIEKF TGNSNRGEYS AV

Type	Start	End	Confidence
Signal Peptide	1	19	0.69
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	207	0.76
Transmembrane Helix	208	231	0.87
Cytoplasmic	232	282	0.73