YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49655635, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQVSNFFEN ILTVEANEKE SDAKGKTTQN ELKQSKLMSD KLKRKSESDF AFWTHKKEGN  60
   61 DEQKSTNTLL TDKLMEKIIS MVIPMNVKDQ GALNERLEMQ KTRPPLSVNL ISKNSILLNL 120
  121 RLSVPFETID GVIKFFNWDN LSFTVGILLV ITHIILNPYL ILVLPLLLIL INIMVPHYLV 180
  181 LHPTDRSVLN SMYFQRNPVP DDGPALRESE IPKPVPEFSN EFILNLTDLQ NHMLLYVVTY 240
  241 DLILWGTKEF LFYKDENISS VVFLGLLILG LHNLFVLPKV VPILFWYLPI RFMLVISIWA 300
  301 VAILFHPVVR NRLLNWMYNE ETRLYFVNLD NQIEEFLLDL IVKVDDEQVK IETKQVEIFE 360
  361 LQRYDKTSKI WELNGFTNDF YTINSPMRKL KQEYLKGKNN DKNDDEEDGE KSENVDINTV 420
  421 PHINAIKPPI DWEFNEESWK LDLNVNDWVN SNLLADLVMI DTDEKWVYDL ESLTTPEFFR 480
  481 RRRWVRSCKR QSSIKDINQS NSGSVYSDYL L

Type	Start	End	Confidence
Cytoplasmic	1	135	0.92
Transmembrane Helix	136	156	0.72
Non-Cytoplasmic	157	160	0.57
Transmembrane Helix	161	181	0.85
Cytoplasmic	182	257	0.73
Transmembrane Helix	258	276	0.93
Non-Cytoplasmic	277	286	0.62
Transmembrane Helix	287	309	0.89
Cytoplasmic	310	511	0.88