YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AATP3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPSSDFSFS PSSLFSAYAS LTGFLMLFRS MLHDFVPEKL RSYFSSLLDR FFTPKSKYLT  60
   61 VIIDENFGLN RNQVFDAAEM YLRSKIGPET ERLRVGKIPK QKHFTISIER GEEILDTFEE 120
  121 SEVKWSYVQS ENEKGDKVKR YYELTFEKKL RDKVLNSYLT HVVAESEEIK RNLRVVKLYS 180
  181 RDVYASDDDD GMAGGNWGCI NLEHPSTFDT LAMDPNAKKK IIDDLERFLK RKEFYKRVGK 240
  241 AWKRGYLLYG PPGTGKSSLI AAMANYLKFD VFDLELSSIY DNGELKRVLL STTNRSILVI 300
  301 EDIDCNAEVR DREAENQEDE QIKGKVTLSG ILNFIDGLWS SFGDERIIVF TTNHKERLDP 360
  361 ALLRPGRMDV HINMSYCTGL GFRTLVSNYL GLDGLNHPLC EEIEALVDST EVTPAELAEE 420
  421 LMQDDDTDVV LRGVISFVEK RKVERSKTKK EVSICKATDD DEKQNGSLGC VKKKKKGGKQ 480
  481 KGKGKGKGKA KTYLI

Type	Start	End	Confidence
Cytoplasmic	1	11	0.34
Transmembrane Helix	12	28	0.51
Non-Cytoplasmic	29	495	0.87