YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	44	0.87
Non-Cytoplasmic	45	80	0.96
Transmembrane Helix	81	103	0.85
Cytoplasmic	104	111	0.78
Transmembrane Helix	112	131	0.92
Non-Cytoplasmic	132	140	0.55
Transmembrane Helix	141	159	0.90
Cytoplasmic	160	167	0.86
Transmembrane Helix	168	188	0.93
Non-Cytoplasmic	189	200	0.76
Transmembrane Helix	201	221	0.93
Cytoplasmic	222	284	0.96
Transmembrane Helix	285	309	0.84
Non-Cytoplasmic	310	322	0.77
Transmembrane Helix	323	344	0.89
Cytoplasmic	345	351	0.90
Transmembrane Helix	352	376	0.90
Non-Cytoplasmic	377	387	0.85
Transmembrane Helix	388	409	0.92
Cytoplasmic	410	428	0.83
Transmembrane Helix	429	448	0.93
Non-Cytoplasmic	449	456	0.77
Transmembrane Helix	457	477	0.93
Cytoplasmic	478	506	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGLALDV SSAGNIDAKI TAAVVMSCIV AASCGLIFGY DIGISGGVTT MKPFLEKFFP  60
   61 SVLKKASEAK TNVYCVYDSQ LLTAFTSSLY VAGLVASLVA SRLTAAYGRR TTMILGGFTF 120
  121 LFGALINGLA ANIAMLISGR ILLGFGVGFT NQAAPVYLSE VAPPRWRGAF NIGFSCFISM 180
  181 GVVAANLINY GTDSHRNGWR ISLGLAAVPA AIMTVGCLFI SDTPSSLLAR GKHDEAHTSL 240
  241 LKLRGVENIA DVETELAELV RSSQLAIEAR AELFMKTILQ RRYRPHLVVA VVIPCFQQLT 300
  301 GITVNAFYAP VLFRSVGFGS GPALIATFIL GFVNLGSLLL STMVIDRFGR RFLFIAGGIL 360
  361 MLLCQIAVAV LLAVTVGATG DGEMKKGYAV TVVVLLCIYA AGFGWSWGPL SWLVPSEIFP 420
  421 LKIRPAGQSL SVAVNFAATF ALSQTFLATL CDFKYGAFLF YGGWIFTMTI FVIMFLPETK 480
  481 GIPVDSMYQV WEKHWYWQRF TKPTST