YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26451454
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.95
Transmembrane Helix	28	48	0.92
Non-Cytoplasmic	49	53	0.81
Transmembrane Helix	54	75	0.91
Cytoplasmic	76	81	0.84
Transmembrane Helix	82	103	0.76
Non-Cytoplasmic	104	108	0.63
Transmembrane Helix	109	132	0.84
Cytoplasmic	133	152	0.74
Transmembrane Helix	153	172	0.68
Non-Cytoplasmic	173	215	0.77
Transmembrane Helix	216	237	0.84
Cytoplasmic	238	249	0.90
Transmembrane Helix	250	273	0.89
Non-Cytoplasmic	274	284	0.83
Transmembrane Helix	285	306	0.88
Cytoplasmic	307	326	0.81
Transmembrane Helix	327	346	0.93
Non-Cytoplasmic	347	353	0.73
Transmembrane Helix	354	376	0.93
Cytoplasmic	377	385	0.96
Transmembrane Helix	386	407	0.90
Non-Cytoplasmic	408	413	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEEQGRAR EDTPLLGKGR PLSGKFKTFA NVFIAIVGAG VLGLPYAFKR TGWLMGLLTL  60
   61 FSVAALINHC MMLLVHIRRK LGVSNIGSFG DLGFAACGNL GRFVVDILII LSQAGFCVGY 120
  121 LIFIGNTLAN LSKPTKSTTL MSLRHLMGVS PKSLYIWGCF PFQLGLNSIK TLTHLAPLSI 180
  181 FADVVDLGAM AVVIVEDIKI TVVQRPQVVA FGGMSVFFYG MGVAVYAFEG VGMVLPLESE 240
  241 TKDKDKFGKV LALSMLFIAV MYGSFGVLGY MAFGDDTMDI ITANLGAGVV SSLVQLGLCI 300
  301 NLFFTFPLMM NPVFEIVERR FWSGMYCVWL RWLLVLAVTL VALLVPNFAD FLSLVGSSVC 360
  361 CALGFVLPSL FHLMVFKDEM EWKQRALDVG ILLLGVILGV SGTWSSLTEI FQE