YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB12I_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHSNLANPT VSLTVTLIPK HPIRHLTSPI PNRNFTNPKL LFPLRLNETP SSSLAAKRVF  60
   61 IVRATVDGDG KTGNWVNRLP IPGLGAENVF RLISSATGSP IGQFISSPVT FLHSVDPRIK 120
  121 LVWLLTLVVL PARANLVVRL GLVLCTALLS ILVLPRQVWI DQLARVSLLS GILFITLGLG 180
  181 SDGAPPMLQS RTPPSSITSL PNLPMSLSGY SYMLLKLGPL QFTRKGLSVG STAACLTFII 240
  241 FQSASICLAT TTPEQLALAL RWFLFPLTYI GVPVSEIILT LLLSLRFINL VFDEVRSVSL 300
  301 GIVSRRVNWQ QLTVLETLDI FASFIRRIFK NIFRHAEQIS QAMIVRGFRG ESSSHKIYFF 360
  361 SGSSNKFADF ASVLCLIGVI STALLSEYFL V

Type	Start	End	Confidence
Cytoplasmic	1	91	0.85
Transmembrane Helix	92	112	0.51
Non-Cytoplasmic	113	134	0.57
Transmembrane Helix	135	154	0.89
Cytoplasmic	155	162	0.60
Transmembrane Helix	163	184	0.84
Non-Cytoplasmic	185	196	0.60
Transmembrane Helix	197	215	0.69
Cytoplasmic	216	226	0.67
Transmembrane Helix	227	250	0.85
Non-Cytoplasmic	251	261	0.69
Transmembrane Helix	262	288	0.78
Cytoplasmic	289	366	0.79
Transmembrane Helix	367	389	0.80
Non-Cytoplasmic	390	391	0.69