YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50419813, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENPEPSKG STPNVEGAEK VNKPPVKKGW SNPALRMMGI PKISLPSRNW MIFWTLLASV  60
   61 GGGVAYDRYQ QKQIRKKWME KFEPLGEEAY RTDRIPRKLS VFIAPPPNDY LDSSMVYFRK 120
  121 YVKPLLNASA IDFDVFTENR QGDIRAAVAE RIRELRIETN ENAKKAQEEA KQEQYDASWT 180
  181 KFFKKDVPNF FTLKFQSNSK EDEALVSSND LYSPKDVLGL YYLKEPIDAK RDDELNPMEA 240
  241 GGVICIGRGA YKEYMTGVHE GLLGPLEAPE EVRTITEVDP QVTENEPETA HNDNESKAVV 300
  301 ELPVLPTDDL PADSVDKQDA VPETPSETAE NTPNAEEGDN EKPVPKPFIT PDEYPNATYA 360
  361 PEFQNVSLIM NKKNVPVIFE QPVYVFPLPI VSGFLNTHRK LYRFFTKRNV ADDYGCRTSV 420
  421 VVQNVSRPFV YKDQFMAKEE ELEWPKKWVA TGKEKNSEWV QELVTDDRVT TRMKVFDVLL 480
  481 AAKSTDKPID KPTNE

Type	Start	End	Confidence
Cytoplasmic	1	45	0.75
Transmembrane Helix	46	66	0.71
Non-Cytoplasmic	67	495	0.96