YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSTR2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.99
Transmembrane Helix	42	62	0.93
Non-Cytoplasmic	63	75	0.84
Transmembrane Helix	76	96	0.87
Cytoplasmic	97	116	0.80
Transmembrane Helix	117	133	0.66
Non-Cytoplasmic	134	147	0.52
Transmembrane Helix	148	165	0.66
Cytoplasmic	166	174	0.75
Transmembrane Helix	175	193	0.89
Non-Cytoplasmic	194	203	0.70
Transmembrane Helix	204	227	0.86
Cytoplasmic	228	245	0.78
Transmembrane Helix	246	266	0.92
Non-Cytoplasmic	267	280	0.81
Transmembrane Helix	281	302	0.83
Cytoplasmic	303	313	0.68
Transmembrane Helix	314	344	0.79
Non-Cytoplasmic	345	406	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNGMAECSV CRSRLVSPSS KAISRAYDNY NYKIRVSSKQ RALNVFLVVG DCMLVGLQPV  60
   61 LVYMSKVDGK FNFSPISVNF LTEIAKVIFA MVMLLFQARH QKVGEKPLLS LSTFVQAARN 120
  121 NMLLAVPAGL YAINNYLKFT MQLYFNPATV KMLSNLKVLV IAVLLKMIMK RRFSIIQWEA 180
  181 LALLLIGISI NQLRSLPEGA TTVAVPIATG AYICTFIFVT VPSLASVYNE YALKSQYDTS 240
  241 IYLQNLFLYG YGAIFNFLGI LGTVIYKGPG SFDILQGHSR ATMFLILNNA AQGILSSFFF 300
  301 KYADTILKKY SSTVATIFTG IASAALFGHI LTMNFLLGIS IVFISMHQFF SPLSKAKDEQ 360
  361 QNGNIELVDA KDGHRAKDSF INMAAGATEE ASHRIESDDR VPLLPR