YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAAT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.93
Transmembrane Helix	33	56	0.89
Non-Cytoplasmic	57	65	0.74
Transmembrane Helix	66	86	0.95
Cytoplasmic	87	98	0.81
Transmembrane Helix	99	120	0.90
Non-Cytoplasmic	121	160	0.89
Transmembrane Helix	161	182	0.92
Cytoplasmic	183	190	0.84
Transmembrane Helix	191	212	0.91
Non-Cytoplasmic	213	227	0.85
Transmembrane Helix	228	251	0.83
Cytoplasmic	252	267	0.87
Transmembrane Helix	268	290	0.93
Non-Cytoplasmic	291	311	0.89
Transmembrane Helix	312	334	0.93
Cytoplasmic	335	361	0.91
Transmembrane Helix	362	381	0.93
Non-Cytoplasmic	382	388	0.72
Transmembrane Helix	389	412	0.87
Cytoplasmic	413	468	0.99
Transmembrane Helix	469	489	0.94
Non-Cytoplasmic	490	495	0.79
Transmembrane Helix	496	519	0.91
Cytoplasmic	520	530	0.85
Transmembrane Helix	531	553	0.91
Non-Cytoplasmic	554	559	0.80
Transmembrane Helix	560	580	0.93
Cytoplasmic	581	609	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCLRSLVRR KQFDSSNGKA ETHHHHQQLA KALTFPHLIA IGVGSTIGAG VYILVGTVAR  60
   61 EHSGPALALS FLIAGISAAL SAFCYAELSS RFPSAGSAYH YSYICIGEGV AWLIGWALIL 120
  121 EYTIGGSTVA RGISPNLAMI FGGEDCLPTI LARHQIPGLD IVVDPCAAVL VFIVTGLCCL 180
  181 GVKESTFAQG IVTTANVFVM IFVIVAGSYL CFKTGWVGYE LPTGYFPYGV DGMLTGSATV 240
  241 FFAYIGFDTV ASMAEEVKNP RRDLPLGIGI SLLLCCLLYM MVSVVIVGLV PYYAMDPDTP 300
  301 ISSAFSSHGI QWAAYLINLG AVMALCSALM GSILPQPRIL MAMARDGLLP SYFSYVNQRT 360
  361 QVPINGTITT GVCAAILAFF MDVSQLAGMV SVGTLVAFTM VAISLLIVRY VVPPDEVPLP 420
  421 SSLQENSSSH VGTSIRSKQP LLGKVDDSVV DKENAPGSWV LNKKNRRKFA GWSIMFTCIG 480
  481 NFLLSYAASS FLLPGLLRYS LCGVGGLFLL VGLIVLICID QDDARHSFGH SGGFICPFVP 540
  541 LLPIVCILIN MYLLVNLGAA TWVRVSVWLF LGVVVYIFYG RRNSSLVNAV YVSTAHLQEI 600
  601 RRTSGHSLA