YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47939971, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVGFIGAGQ LTYALVRGFT VAGVLAAHKI TASSPDTDLP TVAGLRKLGI NFTTSNKDTV  60
   61 KSSDVLFLAV KPPIIPFVLD EIGSDIEDRH VVVSCAAGVT ISSIEKKLGF FHPAPKVIRC 120
  121 MTNTPVVVRE GATVYAPGTH ADVEDGELLE QLMQSVGFCT EVEEDLIDAV TGLSGSGPAY 180
  181 AFTALDALAD GGVKMGLPRR LAVRLGAQAM LGAAKMLLES EQHPGQLKDN VCSPGGATIH 240
  241 ALHFLESGGF RSLLINAVEA SCIRTRELQF IADQEKIPAA AIKKTTLSKV QQESPSISTA 300
  301 PQGSKVSLFN NKYPTGVKKF

Type	Start	End	Confidence
Signal Peptide	1	26	0.47
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	320	0.97