YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49645121
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYNPIHAKL EQLSANCGID EVTLKLAICL FASFPLNGIL KRLPDNNIRL KCYFIVAISA  60
   61 FYIFGILNLY DGFTTLFIST IFTFVVTRYY QSTFMPYVNF VFIMGHLAIN HMYAQFYATY 120
  121 DPTKIDITGA QMVLVMKLTS FAWSYYDGTL ADKKDLTEYQ LSRSVSRHPS LLKFMAYAFF 180
  181 YPSLLTGPSF DYADFESWLN CEIFRDLPES KKPRRKWNKD PNLRRQIPKS AGVALVRIAQ 240
  241 GIFWLVLTFL IKDYVYTDYI FTDEFINVRS FFYRIHYLFL LGFSYRLKYY AAWTISEASC 300
  301 IVCGLGYNGY DTKLNKIKWN RVQNIDICRL ELAQNTHESL EAWNMNTNKW LKNYVYLRVA 360
  361 KKGSKPGFRS TLFTFLTSAF WHGTRPGYYL TFATGALFQT CGKLYRRNFR PIFLAKDGKT 420
  421 PLRSKIIYDV ISFYVTKISF GYLVQPFVIL DFKKSLYGWK TVNFYIHIGI LITFFAFKGP 480
  481 FSKQFTNWLK SFQPVQIELK RQKKMEKEVA ATSGTLGSVI ADKHEFERDE LEGELEHAMD 540
  541 LGIPSVSFDK EQFDNAREDL HEFRRQYEEW RNEKGLEVEE ANLRRAYENF TKQLQPQHRR 600
  601 MSFSDYSPTP IRKKE

Type	Start	End	Confidence
Cytoplasmic	1	49	0.74
Transmembrane Helix	50	70	0.86
Non-Cytoplasmic	71	92	0.56
Transmembrane Helix	93	114	0.73
Cytoplasmic	115	232	0.86
Transmembrane Helix	233	251	0.89
Non-Cytoplasmic	252	288	0.75
Transmembrane Helix	289	310	0.64
Cytoplasmic	311	366	0.90
Transmembrane Helix	367	383	0.68
Non-Cytoplasmic	384	387	0.56
Transmembrane Helix	388	405	0.58
Cytoplasmic	406	425	0.74
Transmembrane Helix	426	449	0.58
Non-Cytoplasmic	450	460	0.60
Transmembrane Helix	461	481	0.85
Cytoplasmic	482	615	0.67