YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49644837
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNFNNLRVL ISFFAFILTT FMNGIKETDT VNAPLLLVIS SASMDALKIE IKLWERAFEK  60
   61 EHGRLPEKDD IKKDKEVKRK YKQYAQLKKD ATVKPSVEVN VEQTPVKSHV NNTKAEFGPT 120
  121 PQMNGKLVSI FEMQVSAMKT HQSDQEDIVG SPVRSNDLVR RQLNFSITPN SSPMKQVPNL 180
  181 SANIVVSRPK YGPNSPMRIG DIGLQLSETP KTLGRTLDLK SSPFSPSPLI KRPVKTLSQL 240
  241 AKEHAIIKDE FESNPEDFSE FTAIRTLMEK LMQEEHMDII EEGDEGTVGN ETESNYVRKV 300
  301 KTIKKRTKAK MRPAALNEKS TNIPDKNVHE QLAKLKEREY NKMLGKEVEE SESDSEQQSN 360
  361 PPVKKKQRKS KYNLVSNNFK RLNLPTKAGR NRASKWRGRR

Type	Start	End	Confidence
Signal Peptide	1	24	0.56
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	400	0.96