YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49644463
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSDGINHLA VPKESNGKIS RVSTKNSKDS LSTDVSNADS KQYPEILNAY SLYPRTVPPF  60
   61 AVDTCANSGS KQYPKRSECD QMFKDTFLMS HSDKWSEFLQ NAGSNPSYTS RIILDKPKTE 120
  121 SSGAGTRGQS TIVSNSSSSL GKNVDEKEIK GHGIVVDEET NKHTDTHAVD TEDGTAYYYG 180
  181 HTTDSSYDEE VERVRQEIFQ NLDGDWEGGK RLDAIFNAPI PESYELSNQR DKNEWLKYVS 240
  241 QLKAFYYLNK DSAKQSSETH SSDDGRFHSI LNKGRNSVNS KKNSWATLEQ RKKQQWLPRL 300
  301 RRLLLQSQYL PLSLRFLIVI LCIISLGLAS RIYQNSDSTV ESFESSIPQQ PSTIMALCVN 360
  361 SIAILYLVYI GYDEFSGKPL GIRDPMTKVR LIMLDLLFII FSSANLSLTF NTLYDNRWVC 420
  421 TSTGTSQVDP PHVGYICDKQ RALAAFLFLV LVTWVVTFSI SILRVVERVS SGAPRP

Type	Start	End	Confidence
Cytoplasmic	1	310	0.94
Transmembrane Helix	311	332	0.89
Non-Cytoplasmic	333	351	0.89
Transmembrane Helix	352	372	0.92
Cytoplasmic	373	390	0.92
Transmembrane Helix	391	410	0.93
Non-Cytoplasmic	411	441	0.93
Transmembrane Helix	442	465	0.90
Cytoplasmic	466	476	0.94