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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49643877, gi|...
Protein type: Transmembrane
Type Confidence: 0.69
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEQTRTQAN TPPQEPLPMQ DKASQNNTGT ASEAQAAAVA AASAAAAAAA ASAVVSSPSP  60
   61 SQSSSGDSNG SGLASGSISS STVGKSGFSK RKSGSKLSSS QSSRPRDHSN DSGIVAMGLN 120
  121 TNSDCSHRIV GHHSHLDDYV QDARQMGNHG FVTPSQSHNN SNNNDNATVS ADDDERNSNS 180
  181 SSKNNINNSV AAGNVGSQDS IQVENQDMDV DVDMDMDMDM DMDIQDASRD DDDAHDSDNS 240
  241 SSSSSSSSSS STASSSSSTN RQKQAASSKT LNFNSERRPS SFNTAIAHNN TTIFKPFDSQ 300
  301 TGQFLPPSSG STKTNDSQDL MDAHHHRNLR PDDTTTASSP PSTSPSTSNM VPNNTPSLMG 360
  361 SLAKANYEKN ENSVTNIAHQ NQNEQGSQLQ QSREEQIQDK QQQQQQQKKH HNHTLTAQPS 420
  421 LNRIHRSKMR SFSVPTILHS SLRKMSSVAQ HEMMIPCKHN LPPAHLTLKH PNTSSASLTN 480
  481 SNSNLNPNCS QPGGLVRKKR SLKKDQFSLR NAILMTHRLQ TMDSKDIPLE ERIKYIKTYP 540
  541 TPIPLPPINL QCLKEIDLSE IVKNPQLRHD IVFDPMLQFR PNLDGERGIK KRQIADKYWS 600
  601 DVENEIYVYN QRPDVFDENR SRLVPLFNTL KDVLVTIVPQ KEVSTVANVL DTELLIQELL 660
  661 KGSLVMSNFS DWLSQLFKHH CAPMRDPWVD KMSSKFKKAE ENNSISTLVE ALRLVFQILE 720
  721 AMKLDIANHQ IRILRPALLS NTVDFEKQYF QSLLNSNRVD LKSSLKWFAE KYNDACADNL 780
  781 IDPSKPTPIP KLYQVCIRSV ISLLSCRKMV KEYPTALSFD HARLILLRAD IRQIVCLMVC 840
  841 KLLFKQLVAN NADLTRPMKE FIIKNYTTKR LKEEIVSIIT DEHGNCRWTK NTLSIAVQLN 900
  901 KVIDQLKEEY LRQYSDGTQS SGAGAPQVSS SSSANLSLDH KKIDFATSWL SKQTQPLSDV 960
  961 YGVLEARVFK SLEEIVFKFG ECSKDGTVKQ DFINMCGNTN TATNATGTAT STLPISNDDS1020
 1021 TGVSSIFQSP SEANRTSTSK KEMEIKESLA AIDMEEFENS YRHLYTVVNF HWSVFGCHYL1080
 1081 EYMGDKVEKV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle