YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49643868
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEREPLLD GQDGKGQLSA NTNVSRREAG VNSTASGSSG GKYIPNTNSA TETANVARKP  60
   61 QQQQENTILD PLLPKVSTKV GPQRTSRKAQ KLKLLPDEAF ERINEDDAPQ DRDVYSQVNR 120
  121 ITDKPARRDA EKLGKNQRHL LPRVTAYCTA SLYKMKELIR WLKDCKRFNH THPKLFDECL 180
  181 YTPFIYTDWR GDKRFEHEDV IRLDDEGGEI STSDKQPDLF IFEYGVIVMW GFTEREEKAF 240
  241 LRDLERFEKE KLAEEDVQVE QFNYYITQSY QPRIYNDFIT LRDGSNYMIK LSISHAIAQS 300
  301 VKISLFEELV DNTIEDTQDI PQEIASSGKV SMSKEDIMKS IGELFILRIN INLHGSVLDS 360
  361 PEIMWSEPQL EPIYQATRGY LEINQRVALV NQRLEVISDL LQMLKEQLGH SHEENLEFIV 420
  421 ILLVGVEVLV SVVNIIVDIV ADKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	417	0.97
Transmembrane Helix	418	440	0.63
Cytoplasmic	441	444	0.61