YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50308277, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLLEPISL KVKILRSLTN PILLFPTLTI LFLIWFMNAV NSFAETVAEN GYSTTITVTK  60
   61 TLLSTATTTA TTTSLINAPT STAIDNTSNL SNLKEYLNSC INSTLELNSR LVNVDITKRL 120
  121 TPLAKSNIQN WQTSFYNTKV LLNNTRTQFL KLNDSVLTDL DEQSDRLNAA VTTLTDLGLI 180
  181 VASSADEDNA LQNIYLDFSN VTEEFSWFEG LLNSSSADTI SLSSPNVSFE TFDLHTTAYS 240
  241 DSVALLISNI SSSLGHATAA EKKLSLKKRQ VSEESSKFVK LTIIFLCIYP MQVIGWVILE 300
  301 WFSHAIRRDM ILGTLDCQLL EMEDKKTTLQ RYDDWKPRLS KLCESVQNPF TVQSATALLK 360
  361 IGDHMWLRRK QNSDYPTDVQ CNRTTAKKVG KLTWWFYNSC AYQLYFLLLI LMTWVVISST 420
  421 IPASYSTSLS KRAVELSSSA TYIPTNSIGK LCESFDTEIN TNIEELVRNF YNTSINQSLE 480
  481 KYNDKMTALV TKLPSSISEY VQWDNFTGTE FNTIVPFNSS AVVSTYLGLS DPYDASSTDA 540
  541 DASLFKREQT AEFDLKFALN KLFRNSIIIW ACIHLFQLVI CIIF

Type	Start	End	Confidence
Cytoplasmic	1	17	0.52
Transmembrane Helix	18	37	0.53
Non-Cytoplasmic	38	241	0.86
Transmembrane Helix	242	258	0.37
Cytoplasmic	259	277	0.47
Transmembrane Helix	278	299	0.85
Non-Cytoplasmic	300	400	0.54
Transmembrane Helix	401	423	0.83
Cytoplasmic	424	561	0.56
Transmembrane Helix	562	583	0.48
Non-Cytoplasmic	584	584	0.83