YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50306493, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	130	0.98
Transmembrane Helix	131	150	0.93
Non-Cytoplasmic	151	161	0.75
Transmembrane Helix	162	183	0.87
Cytoplasmic	184	197	0.71
Transmembrane Helix	198	227	0.70
Non-Cytoplasmic	228	253	0.54
Transmembrane Helix	254	275	0.90
Cytoplasmic	276	282	0.53
Transmembrane Helix	283	303	0.93
Non-Cytoplasmic	304	326	0.58
Transmembrane Helix	327	347	0.55
Cytoplasmic	348	360	0.89
Transmembrane Helix	361	387	0.85
Non-Cytoplasmic	388	414	0.89
Transmembrane Helix	415	435	0.89
Cytoplasmic	436	453	0.87
Transmembrane Helix	454	475	0.91
Non-Cytoplasmic	476	482	0.88
Transmembrane Helix	483	505	0.92
Cytoplasmic	506	530	0.93
Transmembrane Helix	531	552	0.88
Non-Cytoplasmic	553	571	0.91
Transmembrane Helix	572	592	0.94
Cytoplasmic	593	637	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGNFRFNVR NDSTNKEPSK TEVKSAMSVE LAEYFSNTSS TVSRSHKKQG KSRSIDMEKD  60
   61 KIVQIDETLT ENDSDENTEV IEYSSIWSKI YYDYILVDKT LSKLSIKESF LYNHDLKPVE 120
  121 EQRRRWAWYN FLWFWVADCF NINTFQIAAT GLQLGLNWWQ TWITVWIGYA LIGILVALAS 180
  181 RIGSMYHVSF PVAARSSFGI YFSIWSVLNR VVMATVWYAV QSWIALTPVS LMLQSIFGTN 240
  241 LPTRIHDGMG TPNATTYEFM CFFIFWVVSF PALLVPPHAI RHLFTVKAIL VPFAAFGFLI 300
  301 WTLKKSNGEI AFGALSDVEV SDTERRWAYI RSIMACLGNF ATLVVNAPDF TRFSTTKRSA 360
  361 FIVQVVSIPI LFTITSLIGI LVTAAGFTMY NVNYWSPVDV LGRFLQDSYS PGTRAGVFLI 420
  421 SFVFALSQLG TNISANSLSA GTDMTALLPK FINIRRGSVI CACLALCICP WNMMASSSKF 480
  481 TMALSAYAIF LSSIAGVASA DYYVVRRGYI RITHLYSIKP GSFYMYNRFG FNWRALVAYL 540
  541 GSVSFSITGF VGEVGDNIKV SDAAMHLYYM NYIIGYAAAF IIYVTLCWFF PVAGSPVKNI 600
  601 LREKGWYERW VEVEDFPEQW KAMMQKKDLY DEKEIEY