YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49642181
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	137	0.93
Transmembrane Helix	138	158	0.92
Non-Cytoplasmic	159	167	0.63
Transmembrane Helix	168	189	0.92
Cytoplasmic	190	197	0.95
Transmembrane Helix	198	220	0.93
Non-Cytoplasmic	221	230	0.89
Transmembrane Helix	231	251	0.92
Cytoplasmic	252	312	0.93
Transmembrane Helix	313	331	0.88
Non-Cytoplasmic	332	338	0.80
Transmembrane Helix	339	358	0.94
Cytoplasmic	359	367	0.79
Transmembrane Helix	368	387	0.93
Non-Cytoplasmic	388	393	0.82
Transmembrane Helix	394	414	0.94
Cytoplasmic	415	426	0.79
Transmembrane Helix	427	447	0.89
Non-Cytoplasmic	448	454	0.76
Transmembrane Helix	455	476	0.95
Cytoplasmic	477	511	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAQTTAMSS NSVDRYEMSK GKSVIEVGEC DGEGESGSIA SFSIEQESLE NENLEIDPKE  60
   61 EAAFVRKLDT RLLPMLAFMY FLSSLDRSNI GNAYTSGMRE DLQLTSKQYS NAVSVFYSTY 120
  121 LAAELPTTLI LKKTKPKYYM SFLVLSWSII TLCNAFVQSY ASLIALRVLL GAFEGGFFPA 180
  181 MTLIISILYK KQEQGKRIAF FFGSSALSGA FGGLIATGLA SMKPAGGLEG WRWLYIIEGL 240
  241 ISVCASVWLF LELPKDFDNI PYLSARETEI LKIRAKQRVA YMGDGRFEWS YVFDALKDFK 300
  301 TYISFTIQFC QDVILYGFST FVTAILKLGL GYTSREAQYM SVPVYILAAI VFLISAYISD 360
  361 RLKVRAPIFV CYNVIGAVGY ILLLSVHNNS VKYFACYLIT FSLYTGTGLN IAWLTNNVAP 420
  421 HYKRATALGL NQTLGNVSGA VAGQIYTTAP YTFGHSFSLG CIVLSNLLAI TQMFILKRIN 480
  481 RKRQRILSGE ISDDHRGVRN GDNALDFKYC M