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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49641952
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.27
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAGTDIVN PASGEQVVQV DGVDKLAPTA ALSSDAGNVS EEKQVDPAKT SSEVRPVIDA  60
   61 TYVGWKQMGG WEESDTLTFE DELLGVNEET FLDNVIPDKA YGDWYHAVGI FFMGGFLSFL 120
  121 LGKFKFSLGP VFFIILATAV FYRTSVKKYR MSIRELAQKE FVVQKVEDDY ESMEWLNSFL 180
  181 DKYWPIIEPS VSQIVVEQVN EQIAVNEAIP AFVKALWIDR FTLGIKPPRI DLVKTFQNTE 240
  241 LDVVVMDFGM SFTPHDLSDL TSKQLRNYVN QTVVLKAKLF GLTVPVVVAD IAFKARVRVR 300
  301 MKLMTPFPHI ETVNIQFLDV PDIDFVCKLL GNTVFNWEIM SIPGLLPLAR ELARKYLGPL 360
  361 FLPPFSLQLN IPQLVSGSAL SIGVLELTVK NAKDLKRSNL MNISVDPYLQ FSIGGRVLGK 420
  421 TRTVKDTLNP VWNESMFILL ASFTDPLEIT VYDKREHLKD KVLGRIYYNL SSLHDTPLQK 480
  481 NVSSHFIRNS KPVGDLFFDM KFHATLESKK LPDGTVEEVP DLNTGITKIT IEEAKDLDET 540
  541 GKAVNSYVEL FVNSKLVLTT STIKKSEKPS WAAPYEAVVT DRRKTRIKLV VKNDKGDIIS 600
  601 STVQTLNDLI DRTLVAKEWI PLKNGKSSLK ISTQWKPVSL DIGSNDVAYT PPVGVLRILL 660
  661 NKATGLKNLE KFGTIDPYAR VLVNNLPKGR TNVVESTVNP VWNEAIYVAV SSSNQKVSIE 720
  721 CLDVEYAGED RSLGKVDIPI SDMFQKGSDD KYIAHIDDEP KTGNLVSKKG AKGVITYYAS 780
  781 FYPAVPVLSL EEIQEMDEIS KKKANWEKSK AEFEKIGDKK NVELKAKLDE EEEELKELED 840
  841 MYSSKMKLDL DELLQYNSGV LSVYILSGEL PQQGCYLQAF FDANGYARFV SQKSPTRSFR 900
  901 SGMVGDVIIK ELEWSTTTFR VSKDKNLNKA EDCLCEVTIP TIELLKNCYY KPSILSLTGP 960
  961 SSAKIMVQVS WFPISVTKLP QSDLITNCGD LKINIKSAND LISSDRNGKS DPFVKLYLND1020
 1021 NGSPFYKTKT IKKTLDPTWN ESCTVQVANR VNNYLKIKIM DWDAGNKDDN IGEAILPLSK1080
 1081 IDPENPTELD IPLVLPSEKK EDAGVVHLSF EFQPRYVLAV TRKETKIGDL AGKGFSAGLQ1140
 1141 AGTTVIGGGL GAVGKIKKGI FGGKKKDDET EKD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle