YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49641502
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPLNRFQLC VKSQIGLRPF QSLTKLKAYS PASHGCVKTG QFVNLVPRFP LLAALNPRMN  60
   61 LLHYNQNILV SPVKMALRNF HSTPRNMVLG GRDPFRKSPF NNPRFIFSIS PFSFILSTLL 120
  121 FAGFITMIVF VLPFLLALLF PMVIFGIGWY QFKAFRTRKL MQLLDHAFNQ TKMKLSSTTR 180
  181 RELIMKQMVP KFKSFTQLKD FSGFPFKLSQ AFTDKFQSGE FPNADRFLSF VKSRLDESFY 240
  241 KNEHNIKSIV LGSDTAYVPG HMELVTNSYS FVSSVRNNEN IQAFSFMLLN MGSEGVRKPV 300
  301 ALVYIVTKAN PGDELLMFTG DYIDDSKLSP MVIYVRALSP FSKCCFITDV GETGANAQYS 360
  361 VKRKKDGSKE YTYESD

Type	Start	End	Confidence
Cytoplasmic	1	104	0.98
Transmembrane Helix	105	125	0.93
Non-Cytoplasmic	126	130	0.67
Transmembrane Helix	131	152	0.91
Cytoplasmic	153	376	0.98