YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PBN1_KLULA
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVQTIQSES FIEEKRRITV LLDRDGRSVE EKVVNRDGVI TIPNQSGHVQ DRAVLFVPQL  60
   61 ASRPDFIHIS WKRNAEADIT PIKSYIPYGF NIFTNSSGSI AKFIDTPVGK VYYSDTFEDN 120
  121 ALSKWFPPEF VDQLLRYSED NDLDITVTRG RVEVNRYYEL TDDNLFPLNG TESVKTEAGI 180
  181 FQVDTEDDTD TSLSGLRCTW HTGSGALNKC QRTLFFYNQI YADKSSLSEV SLTLSEPVNL 240
  241 HPVVQIDLTS KRPIHNCEYY AYFNLPKYFF IDQFQSIPTL LFGEHDLELP EYKLSGFGSI 300
  301 SLFTLQPGSI NEVTLHSRYI KPTNDGSAFF EAAFTPQVFY ACDTSIELTK RSPFYTGKIG 360
  361 YEHFFTDNTK FYYLNSTKMT INLPKLDSSD NLCIQLFTLG LVLFSVLYLI RKLF

Type	Start	End	Confidence
Non-Cytoplasmic	1	391	0.93
Transmembrane Helix	392	410	0.82
Cytoplasmic	411	414	0.65