YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49640447, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAIWKSTTG RSDTSPSQST QSLLNDKLVE KIIYMALPAS NDLATDTIEN RVQAGAGRPG  60
   61 LSVPIMSRNF VQMNSRLGAP FMIIDEIIRI FNWTNAAYTL CIMSFYSFLV LKPLPVLVSG 120
  121 PFVYILFGIM SPTYMDIHKP DPHMNLDHNP IPARGPPLKN PQLPGPVPEF SKEFILNLTD 180
  181 LQNHMTLYVM AYDFVSNFLA KFAYFKNENV SSAVFLGLLL FSCINSLAID SISSLIPWKF 240
  241 IFLCAGWTFV ISLHPKIRDT MFNLMYSEET RLRILTKMNH IERIINDKFD SYEPRERREA 300
  301 SIFELQRFNA EEKSWELVGY STDEYALFSE SRMKELSTSQ IPNVQTLAEV KPPAEWDWLL 360
  361 NVDWTLDLHP TEWVSAGFIQ YVDVDNETKW VYDVELNGER GQYRRRRWVK ACIRQKHFTA 420
  421 AVKNGGNSTT KSNEVNETDD EMESVDRNLY NGYASITQTS FSGADKNATK TNDANNDNGI 480
  481 VKSPSTASIS SFISQGSTNS VAQQTNSAEK SKAVRSLTDL LSLTG

Type	Start	End	Confidence
Cytoplasmic	1	89	0.93
Transmembrane Helix	90	110	0.74
Non-Cytoplasmic	111	115	0.58
Transmembrane Helix	116	135	0.79
Cytoplasmic	136	209	0.69
Transmembrane Helix	210	229	0.90
Non-Cytoplasmic	230	234	0.69
Transmembrane Helix	235	255	0.82
Cytoplasmic	256	525	0.74