YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49640250
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVCLTATKS IALVSAGLNS GLCFGGVLSP EPTDVTAKRT TNNFDLNREI AIGVLSSLST  60
   61 GFYAASYFGA PTQWKHPYLL YTGALALIST GITAFKLIRR MVWPIVYKRI RCHSKESHVD 120
  121 EKSSAHINQD ITDSVQEQDN DESDHGQDDS VVLVSESSNH SIDSGANDAP STLPLLPTHT 180
  181 ENKSSRLSTT DQCGWSSLLS AFTSDAVLDT VRTISSVGLL LLGTVGGLGE PLALI

Type	Start	End	Confidence
Cytoplasmic	1	49	0.70
Transmembrane Helix	50	70	0.84
Non-Cytoplasmic	71	77	0.86
Transmembrane Helix	78	98	0.93
Cytoplasmic	99	235	0.86