YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50294782, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEESDALLN RGSKSNDMGE NSQAKYIPRP VNSDRSISDS KDGKLGIIDS KTKGISNIAK  60
   61 VTGRQIRNGA QRTSRTAQKL KLLPEEAFHR DEEVSELRDR DVYSQVNRIT DKNARRDAEK 120
  121 LGKAHRHLLP RCTSYCTASS YNMKDLIRWL KDSKKTHHTH PKLFDECLYT PFLYNDWRGD 180
  181 KRFEHEDVIR LDDEGGEINV SDKHPDIFIF EYGVIVLWGF TEREEKAFLN DLEKFEKEKL 240
  241 AEEDIQIEEF NYYVTQSYQP RIYNDFITLR DGSNYMIKLS ISHAIAQSVK ISLFEELVDN 300
  301 TIEDTQDIPQ EIASSGKVSM SKEEIMKSIG ELFILRININ LHGSVLDSPE IMWSEPQLEP 360
  361 IYQATRGYLE INQRVALLNQ RLEVISDLLQ MLKEQLGHSH EEYLELIVIV LVVVEVVVSL 420
  421 VNIAVDMIAN RT

Type	Start	End	Confidence
Non-Cytoplasmic	1	405	0.93
Transmembrane Helix	406	425	0.63
Cytoplasmic	426	432	0.48