YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49529045
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVTNFFWN DTYGRGSAST IDTVGSDSND KDKNTNGTPT TNRHNRRFSN SLEKMNSRDS  60
   61 GSNVQGSFAN TAFSTSGGLQ KAMTDTLVEK IIKMAIPASS ELAANTIKNR MAAGKERPSL 120
  121 SVPITSRNFI LMNSRLSVPF LVIDEIIKIL NWVDPAYTLS MALIYTLIVL RPLQVLSSLP 180
  181 ILYLLFGIMV PEYLHIHEPS ENVYLDTNRV PAQGPPLRKA EVPKPVPEFS QEFVLNLTDL 240
  241 QNHMLLYVQL YDSIIYVLQK FAFFVNEQIS AVAFVLLMIL AVTNIIFIDV LVRIIPIKLI 300
  301 LVATGWAFII ICHPKYRDNF FNKVNSEETR LRLLKLTSSY DDWVNDNLGY VEARETKVVI 360
  361 IYEMQKYKDK HKEWHPVGYA NDDFTLFSQF RINENAIESV AVPSLDSISP PTGWEWAENS 420
  421 SWVLDLDPTG WVEEGFIQFV QIDPETKWVY DINLDGKRGK YRRRLWTNTC VRQIHAGVDE 480
  481 RNASDKLREV SNPLRSDETH SRSIHGVSKG SMSGNVKTEA DIEENAFTDE DDSHITDDSI 540
  541 ASNILNTTI

Type	Start	End	Confidence
Cytoplasmic	1	166	0.76
Transmembrane Helix	167	190	0.61
Non-Cytoplasmic	191	268	0.77
Transmembrane Helix	269	288	0.92
Cytoplasmic	289	293	0.59
Transmembrane Helix	294	316	0.74
Non-Cytoplasmic	317	549	0.70