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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49528967|emb|...
Protein type: Transmembrane
Type Confidence: 0.62
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQRRRESAL NFEETYNGFG EHELEENDYL NDETFGADIE VGTDFDFGHP GKAATNNNVP  60
   61 AQASVMPQRS YVTAASSGIN KPGQQNVDAS MDLKPMESLW GGQTEARPEE PVLSMEEIER 120
  121 QQRQMQQQQH QGPHGPMPPM PMMPPNMPPP NMAMPPPGYG PMPGYQYPMN VNPSMFQGPP 180
  181 PPNMAMPPMQ PSQGGQPMQP GQGGQPMQPP QRMPMPHQPE PPVQSPMSAV QQSSGVSTPQ 240
  241 QSVISSSASP ANSNQAALHQ EQGQQNLAFQ QDEQSQQHQQ QQQYYQRNRF NNQNNNRGNQ 300
  301 RREPLSPEEK MRLQIRHAKV EKILKHAGLM TPRDKDFITR YQLSQIVTED PYNEDFYFQV 360
  361 YKLIQRGGVA AESNKGLIAR AYLEHSGHRL GGRYKRADIA LQRMQSQVEK AVTVAKERPQ 420
  421 KNKDVDSVRE GVLGKISTTM NSKAPRRQLA IPSHKSNEDI AFSDDGKLSR DSTPALEEVT 480
  481 RNLDSVDLNA HSRTRRRSSY AFSSIDHNSV LSRSGGRKFV LSLIETVYEE VLDLEANLRN 540
  541 DKETDSTALW ETLHIDDEVY EVCPFISMLS FDKGVKIIPR IFNFLSKQQK LKLLQKFFSE 600
  601 LSHLNIIILS SYKTNPDPTE SQLKKMDLFQ TVFLKIIVSF LSSSSSFIEI MGLLLYLIKN 660
  661 NNVSFISTSK IGLNLITVLI SRAALIRQDS NRSNVLSSPE ISTWNEIYDK LFTALESKLS 720
  721 AVFPPKEYCD KVVKIQTANA GLSLAANPVS NKFYDQAYIW QFLASLALSG KLNHQRIIID 780
  781 EVRDEIFGTI NTAEQLKKLP TEDQNGSLYR REKLYQDLNL FLNVMGLVSR DGEIMELK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle