YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49528290
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.84
Transmembrane Helix	21	39	0.87
Cytoplasmic	40	50	0.85
Transmembrane Helix	51	72	0.89
Non-Cytoplasmic	73	92	0.75
Transmembrane Helix	93	113	0.88
Cytoplasmic	114	174	0.95
Transmembrane Helix	175	194	0.74
Non-Cytoplasmic	195	235	0.76
Transmembrane Helix	236	255	0.73
Cytoplasmic	256	267	0.56
Transmembrane Helix	268	282	0.38
Non-Cytoplasmic	283	287	0.46
Transmembrane Helix	288	308	0.65
Cytoplasmic	309	364	0.85
Transmembrane Helix	365	381	0.55
Non-Cytoplasmic	382	385	0.49
Transmembrane Helix	386	403	0.55
Cytoplasmic	404	423	0.83
Transmembrane Helix	424	448	0.83
Non-Cytoplasmic	449	458	0.72
Transmembrane Helix	459	479	0.86
Cytoplasmic	480	622	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNPIDAGIL RISQTYGVDD FMIRFALCLL GSFPLNAVLK RLPNDKKNLK CVYIISMCML  60
   61 YLVGIMNLIG GVRTLLISSL FTYATSRFYK SSLMPHLVFV FVMGHLALNH SYIQFFVEKA 120
  121 PGQNSVDITS AQMVLAMKLT SFAWSYYDGT YLKDHSYEEL SSYQKSKAIR KHPSLLRFMA 180
  181 YTFFYSTILT GPSFEYADFE SWLDCEMFHD LPDQKQGSNK YYRTIPKNGT LAGWKVIQGI 240
  241 FWIVLSTLGP KYFPVSYVLN RETFMKRSFI YRIHYMSLLG FIQRLKYYAA WTIAEGACIL 300
  301 CGLGYNGYDP KTKKIKWNRV QNIDVYHVEF AQSTKECLEA WNMNTNKWLK YYIYLRVAKK 360
  361 GKKPGFRSTL FTFLTSAFWH GTRPGYYMTF ATGALYQTCG KFYRRNFRPI FLQADGKTAA 420
  421 ASKWLYDLIC FYVIKLSFGY LVIPFIILDF KTSMQAWSTV YFYGHIIVAL SFFAFRGPYA 480
  481 KKVVNACKSL QPLQVEAKQQ KEVEKKIAAS SGTLGDILKE KHAYEETRQK SEEPSITLGI 540
  541 PTIDIQDGQW SNAKHEWEEF QKDYFEWREQ KGLEIEEENL TKAFQKFKEE LVGAKDDSGQ 600
  601 RLRRMSFSDY STDALVQEKE NK