YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49527608
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLINTVSVIA QRNNTSATSK FHIAYKNMLS RFSGIATRNP LRASSLILKG LPNRNAKIVQ  60
   61 LLSLTSVTRS TQSLPALRSS NQLLTIPPCQ PRTLNKVLKR GFYTTSKKSI KFIFSKGDKD 120
  121 NHNKMKYYSI PTPVVILSTI GGFVLLFTIL PFLFTFGFPF LIGMIVFFQF RRWKTHQLYK 180
  181 KMAEVLQDSQ INMKNNQLMS LKYRLIEQGL PMLTNFSNKT TKQLSSRGET LINQLQQRIK 240
  241 ESFANNDNNI ANVFVPQGHK LSEYELLLPH HTFKSYTKKL PHDQDIGLLS LSLYMRRRQH 300
  301 RNIKVAMPIP VELNLGNKVA NVYFVYKGDT ARGLLNTQIL LEAAKAGVDL QEIKSSTQFL 360
  361 ISIVPLDSWL PTQYIIADAG SLGSFNEDPS SSSREFVINN KSK

Type	Start	End	Confidence
Cytoplasmic	1	126	0.93
Transmembrane Helix	127	149	0.77
Non-Cytoplasmic	150	151	0.53
Transmembrane Helix	152	173	0.80
Cytoplasmic	174	403	0.78