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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49527392
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDEASTSGY KSSQHDEGIM FKGIGEITMS SSRETQDDML KADKKEADGD IKEIAAKQEL  60
   61 KVSKNIQVSA GDLVDEFERQ RKRAAYVGWK QMGGWEEKDE LTLEDELMDA NSDTLLNNVL 120
  121 PEPLYGDWYH NVAIYFLAGV LSFAVGHFKF SLAPVFFITL FSALYYRTSA KKNRASIREL 180
  181 VQKEFTVQKI EDDYESLEWL NTLLDKYWPI IEPAVSQMVC EQVNDILATN DSIPAFIKAL 240
  241 WIAQFTLGIK PPRVDYAKTF PNTDSDVVVM DWGLSFTPHD LSDLNAKQMK NYVNQKILVK 300
  301 AKLFGMTIPV TVANVAFKAK TRIRFKLMTP FPHVETINIQ LLEIPDIDFV ANFMGNNLFG 360
  361 WEILAIPGLM PLAKALARKY AGPILLPPFS LQLNVPQLVS ESPLSVGVLE ITVKNATDLK 420
  421 RVNNMIDTSV DPYITFQMGG KEVARTRTVR DTLNPVWNET IYMLLPSFTD PMTITVYDRR 480
  481 EKLKDKILGR IEYNANSLHD KPTQRNVSQQ FLRNSKPVGK MTMDLRFFPT LSSKKLPDGT 540
  541 VEDAPDLNTG LAKIIVDEGS SIVDKDGSAS VEVYFNSTMV LSTAKGSPKR GVITWGDMYE 600
  601 AIITDRRKAR FRFVVKDKNG ENINSTLQSL SDLIDRTQIG QKNIPLAHGN ARLTVTTYWK 660
  661 PVMLDVGNKS IAYTPPIGAL RVFVNKASNL KNLEKIGKID PYAKILVNGI QRGRTDFDAQ 720
  721 TTNPVWNTGV YVALTSPNQR ITLECMDVET SNKDRTLGQF DIKLNDFFQK NSLDRYDTKV 780
  781 DSTQRQGRLT AKKFSKGVVT YSISFYPTLP VLTLEEIQDI ESAEKRKAKL DEKRKLLTDG 840
  841 KLSKEEKQKL EEEELEIKEI EEMHNNKRKL SLDQLLEHKI GILAISVLSG DVPDIGVYVQ 900
  901 SFFDGNAHAR FISPKLTSRT INSGWTGDVM IKELDNSVVT FKVTRDKFSG KTSDKLCDVT 960
  961 LSTIDLLRES YYKPSILTLS GQHTAKLMLQ VQWFPMDIED LPPEDLMSNS GDLTIIAKNA1020
 1021 ENLLSADTNG YSDPFLKFYY NDEDDACFKT KTIKKTLNPT WNEKGVIEVR NRVYDVLYLK1080
 1081 VMDWDAASAD DVIGRATIPL SKIDPHNTTT LDVPVVDDEG RDGGIVHLEF QFSPRFVTLT1140
 1141 DSEQKTVADA PVKSIGSGLK AGTTVVSSGL GSVGKIGKGI GRGLGLKKSK KHNEDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle