YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIM54_CANGA
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPALKALGL GNFKLPSRNW TIFWTVLAGS LGGVGYDKYQ QRQIISRYCD EVKPLSLQHC  60
   61 DVNKSPRKIT VFIAPPPNDY LETSLKIWRR YIKPVLYYAG LDYEVIEEDR QGIIRSEVAS 120
  121 RIRQLRRELL EADNEQQGNS GDSLLSIFKK PHAKDPEEEQ KFDPEQARQF KADFDFRNVM 180
  181 GIYTKVPKLD TIVQTDSLVA DPVLAGGVVC VGRGAYKEYI TGLHEGLLGP LDPPEETTQE 240
  241 VEMGSKLKSM NDGDNVETTV ETAVETMVET TLESADKVEV EGKDTENEEG KDEPDEEKSR 300
  301 VLKPYLLRTA FHDTPIPPEV EPVLEKDALL KDPKTNVPSL LHQPVLVIPV PNLIGFLTIP 360
  361 ERIYRFYQRR FFVDEVCREA SNLVKQEHIV KYEPDKHINL ALEEESDWPK QWVKTGIEKN 420
  421 SEWTQELVQD QRVVSKMHVF ELPKHTTKDT KE

Type	Start	End	Confidence
Cytoplasmic	1	19	0.62
Transmembrane Helix	20	36	0.65
Non-Cytoplasmic	37	452	0.96