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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49525381
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFSHFLKYN AVPEWQNHYM DYSELKNLIY TLQTDELKNG PIGNQPPERG PVVEEEDEVI  60
   61 ASSSKHFAEK LKKKFFSKKP SSNTTGSHLA TEQSSSHAIH HSKNKDGNKE ASVEEETYEL 120
  121 KDINQASAIT NAGSLAANNN SKEGKNSKSS PLRKVKEKFF ESRRSSLSSE GQTLFNTYDA 180
  181 FVTSLTVEKF KVDDFYKRIE AKFYERFETL SKDLEKEGMV IVTRHPSLSH TENVDSPFAD 240
  241 AMNKDTQVDE HGNVAPITSI DKNNSYLEVS EDGEDEDDFV DEDVFSESGD NTALLNYSQF 300
  301 NVKSQRKSIL KQSIINLYVD LCQLKSFIEL NRMGFSKITK KSDKVLLLNT REELIHSGEF 360
  361 FKDTYVFQDS TLMILNGKIA QLVEFYAMIT GHERGNIAQA KQELKSYLHD HIVWERSNTW 420
  421 KDMLGLLSQS KDITTDIDGA VANAHSISKL DLEYYEYPLP RPIPLKFTTI YKLQVPKLFF 480
  481 TLKAFKIAFI FVATAILLAV PTFHDPAQHR CMALVECVAF LWASEAIPLH VTAFLVPLLV 540
  541 VLFKVLKDSN GHVMKAAEAS TLILSTMWSS TIMILLAGFT LGEVLAQYNI AKVLASWLLA 600
  601 FAGTKPRNVL LMAMSVVFFL SMWISNVAAP VLTYSLLSPL LDPLDASNQF AQSLVLGIAL 660
  661 AANIGGLSSP ISSPQNVISM QYLKPYGIGW GQFFAVALPT GILSMLLVWG LMCMTFKINL 720
  721 TKLDKFTPIR TRFTLKQYFI IVVSIGTILL WCVESKIEGA FGSSGIIAAL PIVLFFGTGL 780
  781 LSTHDLNTFP WSIVILAMGG VALGKAVSSS GLLSTIARAL QKRIDHDTAL AVLCIFGVLM 840
  841 LVVGTFVSHT VSAIIIIPLV QEVGDKLNDP KAAPILVFGC ALLASAGMGL ASSGFPNVTA 900
  901 ISKLDKKGNR YLSVGTFLSR GVPASLLVFV CVITLGYGIM HSVLKAPTQS AT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle