YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49525066
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEPQHLFR FPFHLPSFDG MRTIGVYLAG VLYALGFWAF IDSVLFSKYN NASDLHITFV  60
   61 DWVPFLCSTF GMLIVNSIEK NRLLQGALSG DNGMFGGMNM DSQLAWQARS VLFLGFALLA 120
  121 GGISGSLVIL IIKYIVRDYI SFPTLGMGIE NVVSNACVML SCVVLWVAQN IEDEYSYNLT 180
  181 L

Type	Start	End	Confidence
Cytoplasmic	1	19	0.79
Transmembrane Helix	20	41	0.90
Non-Cytoplasmic	42	56	0.70
Transmembrane Helix	57	78	0.80
Cytoplasmic	79	110	0.58
Transmembrane Helix	111	135	0.88
Non-Cytoplasmic	136	146	0.49
Transmembrane Helix	147	168	0.77
Cytoplasmic	169	181	0.51