YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50285469, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	142	0.94
Transmembrane Helix	143	161	0.79
Non-Cytoplasmic	162	173	0.68
Transmembrane Helix	174	197	0.82
Cytoplasmic	198	208	0.65
Transmembrane Helix	209	232	0.74
Non-Cytoplasmic	233	266	0.78
Transmembrane Helix	267	287	0.94
Cytoplasmic	288	294	0.87
Transmembrane Helix	295	315	0.94
Non-Cytoplasmic	316	335	0.88
Transmembrane Helix	336	357	0.86
Cytoplasmic	358	376	0.85
Transmembrane Helix	377	399	0.93
Non-Cytoplasmic	400	426	0.90
Transmembrane Helix	427	447	0.88
Cytoplasmic	448	465	0.87
Transmembrane Helix	466	487	0.91
Non-Cytoplasmic	488	494	0.86
Transmembrane Helix	495	517	0.92
Cytoplasmic	518	543	0.93
Transmembrane Helix	544	567	0.81
Non-Cytoplasmic	568	585	0.84
Transmembrane Helix	586	606	0.93
Cytoplasmic	607	660	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSHDADAFE GHATRRRSTV GHHQINSDDD DSDNYYNETG SGGSKRNLRN LFGSSKESDK  60
   61 DEAGDSNHVV TNLLDVTSVD VESFDEDEKL AKPKYKSRWQ EIYYEYIIVD KSTIGTSLLD 120
  121 SFMYNHDLKP VEEERRVWSW FNFVYFWLAE SFNINTWQIA ATGLQMGLNW WQCWVSIWIG 180
  181 YSFVGIFVVL ASRVGSAYHL SFPISSRAAF GIFFSLWPII NRVVMAVVWY SVQAYIAATP 240
  241 VSLMLQSIFG NDLPRRIPDH FGSKNATTYD FMCFFIFWVA SLPFLWVPPH KIRHLFTVKA 300
  301 ILVPFAAFGF LIWAIRKAHG KIALGTLNDS QPHGSAFSWV FLRSIIGCMA NFSTMVINAP 360
  361 DFSRFSKHKN SAMWSQLICI PFLFSITCLV GILVTAAGYE LYGVNYWSPL DVLQKFLDTA 420
  421 FTSGTRAGVF LISFVFAIAQ LGTNISANSL SCGTDMSALL PKYINIRRGS IFCAMMALCI 480
  481 CPWNLLATSS KFTMALSAYA IFLSSIAGVV CSDYFVVRRG YIKLTHIYSH RKGSFYMYNN 540
  541 RFGINWRALV GYLCGVAPNL PGFIASVGGP NIKISMGAMK LYYLSYWVGY FLSFISYTAL 600
  601 CYFFPVPGTP VKNILRDKGW YQRWANVENF ETEWRHMLER EDLYGDDVSI YNHEEEEKFF 660
  661