YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PBN1_CANGA
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESVRHRIAL LFANEADIQD VETVEDGVIV FPNSNITIQD RWTYAIDYEL DSIRRISWRN  60
   61 PSSTRQFSVI ESRLAPGFNI YSNDKEARLN LFGIQPVYSP MYKSLHSETW KSINEILPGG 120
  121 KNLNIPWNPE LCDYDILITA NTVQVFSYCS LVEKKKFVKD AGKVEIGLFH VDTEDEEDIN 180
  181 LSGLRCTWED TSNNIGKCEK TTLFYKPFHL YVDDSSDIAP ITIENTNGLH PKMKIDLSGI 240
  241 RKDKDCRHFV FSQLPSEIFV DKFQSPGSIV FGLDDLELPD YKVNSLSWGS ESIVTLKEGQ 300
  301 INEITYFSRY LEPKERASNK TVGFEPILFK ACQVGKEEDL SNPFYSRSLG YEAYFSENTK 360
  361 FYHINSTSVH VNIPYPNKND IGNIEYTTFG IVVLAICYLI YKLLRPSRKL STVKRD

Type	Start	End	Confidence
Non-Cytoplasmic	1	385	0.99
Transmembrane Helix	386	404	0.71
Cytoplasmic	405	416	0.73