YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49339463
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.13
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPSAADRRS ALALLSALLL AALQTRSAGA LHVQQAFATP GRTNNFALDA ASGRVYLAAV  60
   61 NNLYQLNATL ALEVEMRTGP VLDNPLCHAP QLPQATCEHQ KTLTDNHNKL LALDRAQDVL 120
  121 LACGSVYQGF CELRRLENVS RLAVQFPQDG ATVFPSMLNI AANHENASTV GLVFRTHGGS 180
  181 PRLLVGATYT GMGTEYFPKN HSKEDLRFEN TPEIAIRALD TRELGRLFTY DINPSEDNVF 240
  241 KIKQEVKQKN KLSFVHAFAL GNYSYIAFNN DANSGLKESQ PNSVLARICL DTDAPRRAAE 300
  301 SRKLTESYAQ MGLRCGTYTR LLSVSPAELR AETFLFAVFG RADGRAAVCV FRVAEVEEMI 360
  361 RQGRRNCSHG PNSDVQVLDS VIQGSGAECE GKGSIMLQLQ TDQLNCGAAH LQHPLALRRP 420
  421 LRARPLYEAQ GLSSVAVDSA HNHTLMFLGS RGRLHKVSLH SNFSVSQQWS LRLPANEPVH 480
  481 HIMTFDPSDR TYLYVMTSHH LLRVRVSSCE QYSSCGDCLS AGDPHCGWCT LERRCSVQQD 540
  541 CSSVSLSRSW ISISEGVQQC PSMTITPAEI SRSAEMRDVG ILVAGSVPDL QGLRVECDYG 600
  601 MGISTNATVH LDYGTSHIQT CPLPPAHTLP TIPSGTDHVT VPVSINANGV SVVSGRFIIY 660
  661 DCERTGQIHS TTACTSCLSS AWRCFWDPQL HQCVSSKNNT QQLLQNSSSC PSMVAYEVPP 720
  721 LPTGSSPVFS LELKNVEHGT ALECVYSDGQ QYRAQWLDGP WVNCSGATLK TTQWSESFSL 780
  781 NLRRAGDATY IDNPQRMTVE VYSCSAGVSD CSQCLGRAAL GQECVWCEHI CRQQDQCPTT 840
  841 SSARCPAPLI HKIEPLSGPL TGGTLLTVTG KNLGHRADQL SVSIGGVTCH TLPQQYTVSI 900
  901 RLVCETDASL EQMSGQVTVG VAGDAVGVSK EQFSFVEPRL LRFSPAQGPL AGGTTLTIQG 960
  961 QFLDAGSTTD IQINNTHTCS IRTRSSEIIR CVMPAAASAE NVSVCVVFDG RPCVSASPNF1020
 1021 TFSYQKNPTI SHIWPSRSYI SGGRSISVSG VGFDLVQSVV MEVPGVGQTN CSCVSSTLIL1080
 1081 CQSPAADQAQ QTAVLFSLNG VQYRDAASAG LEEGEQPHTQ RYSFQYVEDP QFYTANKEKL1140
 1141 IKHHPGEPLI LIINKGPSDL DLTLDEYSVT IGSDLCDITF HNQQLFHCSI NRSLSASTGE1200
 1201 LPVTVRVGHF QKVIAMVQMG GGSELAIVVS IVVCCVLLLL CTVALVVYCT KSRRAERYWQ1260
 1261 KTLVQMEEME SQIRDEIRKG FAELQTDMTD LTKELSRTQG IPFLEYKQFV TRTFFPKMCC1320
 1321 DYERRLVQPV YENDPLGPRA HSETHPLLQD WQPAGSVRPN LEEGITLFST LLNNKHFLVT1380
 1381 FVHALEQQRD FAVRDRCNLA SLLTIALHGK LEYYTSIMKD LLVDLIDASA TKNPKLMLRR1440
 1441 TESVVEKMLT NWMSICMYSY LKETVGEPFF LLLCAIKQQI NKGSIDVLTG KARYTLNEEW1500
 1501 LLRENIEAKP QNVMVSFQGL GMDSVCVRVM NSDTICQVKE KILEAFYKNL PYSQWPREED1560
 1561 VELEWFPEGR SSRILQDLDD SSVMEDGRKK LNTVFHYQIP DGASLAMSLK DKRENTLGRV1620
 1621 KDLDTEKYVH LVLPHDELME SRKTHRQSQR KKVLPEIYLT RLLSTKGTLQ KFLDDLFQAI1680
 1681 LSVPAENPPL AIKYFFDFLE EQADKRGITD PDTLHIWKTN SLPLRFWVNI LKNPQFVFDI1740
 1741 EKTDHMDACL SVIAQAFIDA CSLSDLQLGK DSPTNKLLYA KEIPEYKKRV QSFYRQIQEL1800
 1801 PALSEQEMNT HLAEESRKHR NEFNTTLALT EVYKYAKRYR AQVASALDSN PTARRTQLQH1860
 1861 KFEQVIALVE DNIYECSSEA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle