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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39979138
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTRLAGTSE DGHLCPVEAP FPNVDFLLHQ QLQQEQDVYA NSTTNATASP PIAPTSVLPR  60
   61 PSRPSQSSAA ERTSPESPSV RQSPTKRDRN PGPSSISGAG PLNLEHQSPS QQSQNQQQQQ 120
  121 QQQQQQQQQQ QQQQSFYARS RRSGNFNWKL SHSRNGSIEK PPPSFFSSSF SHSPSTPPLS 180
  181 LGAPANGAAH SKEMEKEEEQ KFVGKRPRIR SPWAITFVTL LISILGIGFL ALVLNSSFTR 240
  241 HIDPKGCRMS YMRPGYAKFD DFDTEHTRFA SKYSLYLYRE LGIENDAKVR GVPVLFIPGN 300
  301 AGSYKQVRPI AAEAANYFHD VLQQDESAVK AGARSLDFFT VDFNEDITAF HGQTLLDQAE 360
  361 YLNEAIRYIL SLYLDRTRSD RDPNLPDPTS VIVLGHSMGG VVARTMLIMP NYQANSINTI 420
  421 ITMSAPHARP PVSFDSEIVK TYKDINDYWR RAYSQQWANN NPLWHVTLVS IAGGGLDTVV 480
  481 PSDYASVESL VPDTHGFTVF TTSIPNFRKA LVKAIFDVVD VNRAAQTKPR ADRMRVFKRW 540
  541 FLTGMEEVAE KTVPSKDPST LLTLEDNLSS VIAQGERLVL RSLGASGAVR AHLLPIPPSG 600
  601 SPEAKRFTLL TDHKLDVSSE SGRLEVLFCS VFPMQPGQAV AGFAAQINLA GDSSASTRLA 660
  661 CNNAASDVVT LPASLRSSQY PFSKEGEPPK THFSYLQYDV EDIAEHQYVA VIEKTHTPTP 720
  721 GFVIAEFSDV SQSHRTRHIS LRRLLAFGMK FRLPSSRPMV SELKVPTMQS SLLAYNLEIS 780
  781 EQNCGKQQEL FAPLIRQYLT EPYESKFFVN AREAAVSIHG VAPYVPPPLK SRSTEDGLSF 840
  841 QFWTDPTCAS NINIKMSIDV MGSLGKLYMR YRTVFAAFPL LVVTLVLRKQ FRIYDTTGVF 900
  901 ISFSESLDLC LRQSIPLVLA FLTFLSLFIW NSSSSATANI WNWANVTSGA IDFHQNDLLI 960
  961 GTQDPFFWFL VPVIGLICVG ICTVFNYMTL TLVHILSTAV SLLSFRPGWI RNDERRKALP1020
 1021 LPAFYPTSPR RRMVTTAILL VLVSTLIPYQ FAYLVCCLVQ LTTTVRAQRL ASDLRSAANS1080
 1081 NFYNYVHSIL LLMLWILPIN LPILVVWIHN LAVHWLTPFS SHHNVLSIMP FIILVETLTT1140
 1141 GKMVPRVNSR FKHFTSVLLF GIALYAAIYG VSYAYMLHYL VNLVAAWLAI VHSTSDNWSV1200
 1201 LSGIKHISCT LFDAGNTNNV GGVNGTNNTM LAEDCKMRKE P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle