YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RUS1_PONAB
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDAGLETS LCSEQFGSGE ARGCRVAADG SLQWEVGGWR WWGLSRAFTV KPEGRDSGEV  60
   61 GAPGAPSPPL SGLQAVFLPQ GFPDSVSPDY LPYQLWDSVQ AFASGLSGSL ATQAVLLGIG 120
  121 VGNAKATVSA ATATWLVKDS TGMLGRIVFA WWKGSKLDCN AKQWRLFADI LNDVAMFLEI 180
  181 MAPVYPICFT MTVSTSNLAK CIVSVAGGAT RAALTVHQAR RNNMADVSAK DSSQETLVNL 240
  241 VGLLVSLLML PLVSGCPGFS LGCFFFLTAL HIYANYRAVR ALVMETLNEG RLRLVLKHYL 300
  301 QRGEVLNPTA ANRMEPLWTG FWPAPSLSLG VPLHRLVSSV FELQQLVEGH QEPYLLCWDQ 360
  361 SRNQVQVVLN QKAGPKTILR AATHGLMLGA LQGDGPLPAE LEELRNRVQA GPKKESWVIV 420
  421 KETHEVLDML FPKFLKGLQD AGWKTEKHQL EVDEWRATWL LSPEKKVL

Type	Start	End	Confidence
Cytoplasmic	1	169	0.54
Transmembrane Helix	170	189	0.40
Non-Cytoplasmic	190	246	0.64
Transmembrane Helix	247	274	0.78
Cytoplasmic	275	468	0.60