YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34392439
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGGDVNQA EKSVFGMPGF VVDFLMGGVS AAVSKTAAAP IERIKLLIQN QDEMHKQGRL  60
   61 DRKYNGIVDC FRRTAAAEGV VSLWRGNTAN VIRYFPTQAL NFAFRDTYKS MFAYKKDRDG 120
  121 YAKWMMSNLA SGGAAGATSL LFVYSLDYAR TRLANDAKSS KGTGERQFNG LVDVYRKTHN 180
  181 GIVDCFRRTA AAEGVVSLWR GNTANVIRYF PTQALNFAFR DTYKSMFAYK KDRDGYAKWM 240
  241 MSNLASGGAA GATSLLFVYS LDYARTRLAN DAKSSKGTGE RQFNGLVDVY RKTLATDGIA 300
  301 GLYRGFGPSV LGIVVYRGLY FGMYDSIKPV LLVGPLEGSF LASFLLGWTV TTGAGVASYP 360
  361 LDTVRRRMMM TSGEAVKYNS SMDAARQIVA KEGVKSLFKG AGANILRGVA GAGVLSIYDK 420
  421 AQMLLLGKKF

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.57
Transmembrane Helix	15	34	0.54
Cytoplasmic	35	123	0.88
Transmembrane Helix	124	144	0.79
Non-Cytoplasmic	145	243	0.79
Transmembrane Helix	244	263	0.78
Cytoplasmic	264	299	0.90
Transmembrane Helix	300	320	0.88
Non-Cytoplasmic	321	339	0.87
Transmembrane Helix	340	361	0.93
Cytoplasmic	362	430	0.88