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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FND3B_MOUSE
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVTMMMTDQ IPLELPPLLN GEVAMMPHLV NGEAAQQVIL VQVNPGETFT IRAEDGTLQC  60
   61 IQGPAEVPMM SPNGSIPPIH VPPGYISQVI EDSTGVRRVV VTPQSPECYP PSYPSAMSPT 120
  121 HHLPPYLTHH PHFIQNSHTA YYPPVTVPGD MPPQFFPQPH LPPTIYSEPE IIPLYGMSSY 180
  181 VTREDQYSKP PHKKLKDRQI DRQNRLNSPP STIYKNSCAT VYNGYGKGHS GGSSGGGGGG 240
  241 SGGGPGIKKT ERRARSSPKS SDSDLQEYEL EVKRVQDILS GIEKPQVSNI QARAVVLSWA 300
  301 PPVGLSCGPH GGLSFPYSYE VALSDKGRDG KYKIIYSGEE LECNLKDLRP ATDYHVRVYA 360
  361 VYNSVKGSCS EPVSFTTHSC APECPFPPKL AHRSKSSLTL QWKAPIDNGS KITSYLLEWD 420
  421 EGKRNSGFRQ CFFGSQKHCK LTKLCPAMGY TFRLAARNDI GTSGYSQEVV CYTLGNIPQM 480
  481 PLAPRLVRAG VTWITLQWSR PEGCSPEEVI TYTLDIQEDE NDSHFHPKYT GEDLTCTVKN 540
  541 LKRSTQYKFR LTASNMEGKS CPSEVLVCTT SPDRPGPPTR PLIKGPVTSH GFSVKWDAPK 600
  601 DNGGSEIPKY LLEITDGTPE AGQWEVAYSG SATEYVFTHL KPGTLYKLRA CCISTGGHSQ 660
  661 CSESLPVRTL SLAPGQCRPP RVLGRPKHKG VHLEWDVPAS ESGCEVSEYS VEMTEPENVA 720
  721 SEVYHGPELE CTVGNLLPGT VYRFRVRALN DGGYGPYSDV SEITTAAGPP GQCRAPRVSF 780
  781 TPDGCVLVGW ESPASPGADI SEYRLEWGED EQSLELVYHG PDTCFEMRDL LPAAQYCCRL 840
  841 QAFNPAGAGP YSELVHCQTP ASAPDPVSTL CVLEEEPPSA HPDSPSVCLV LNWEEPCNNG 900
  901 SEILAYNIDL GDSCITVGNT TTHVMKNLLP ETTYRIRIQA INEIGVGPFS QFIKAKTRPL 960
  961 PPSPPRLECA ASGPQSLKLK WGDSNSKTHA AGDMVYTLQL EDRNKRFISI YRGPSHTYKV1020
 1021 QRLTEFTCYS FRIQAMSEAG EGPYSETYTF STTKSVPPTL KAPRVTQLEG NSCEIFWETV1080
 1081 PPMRGDPVSY VLQVLVGRDS EYKQVYKGEE ATFQISGLQS NTDYRFRVCA CRRCVDTSQE1140
 1141 LSGAFSPSAA FMLQQREVML TGDLGGMEEA KMKGMMPTDE QFAALIVLGF ATLSILFAFI1200
 1201 LQYFLMK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle