YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERDL3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.95
Transmembrane Helix	30	53	0.88
Non-Cytoplasmic	54	67	0.87
Transmembrane Helix	68	90	0.88
Cytoplasmic	91	99	0.85
Transmembrane Helix	100	119	0.93
Non-Cytoplasmic	120	126	0.82
Transmembrane Helix	127	148	0.90
Cytoplasmic	149	156	0.87
Transmembrane Helix	157	178	0.91
Non-Cytoplasmic	179	185	0.78
Transmembrane Helix	186	204	0.97
Cytoplasmic	205	263	0.97
Transmembrane Helix	264	282	0.91
Non-Cytoplasmic	283	300	0.75
Transmembrane Helix	301	322	0.90
Cytoplasmic	323	330	0.89
Transmembrane Helix	331	352	0.93
Non-Cytoplasmic	353	363	0.78
Transmembrane Helix	364	388	0.89
Cytoplasmic	389	398	0.85
Transmembrane Helix	399	420	0.89
Non-Cytoplasmic	421	427	0.80
Transmembrane Helix	428	450	0.89
Cytoplasmic	451	470	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMSENSRNL EAGLLLRKNQ NDINECRITA VVLFSTFVSV CGSFCFGCAA GYSSVAQTGI  60
   61 INDLGLSVAQ YSMFGSIMTF GGMIGAIFSG KVADLMGRKG TMWFAQIFCI FGWVAVALAK 120
  121 DSMWLDIGRL STGFAVGLLS YVIPVYIAEI TPKHVRGAFV FANQLMQSCG LSLFYVIGNF 180
  181 VHWRNLALIG LIPCALQVVT LFFIPESPRL LGKWGHEKEC RASLQSLRGD DADISEEANT 240
  241 IKETMILFDE GPKSRVMDLF QRRYAPSVVI GVGLMLLQQL SGSSGLMYYV GSVFDKGGFP 300
  301 SSIGSMILAV IMIPKALLGL ILVEKMGRRP LLLASTGGMC FFSLLLSFSF CFRSYGMLDE 360
  361 LTPIFTCIGV VGFISSFAVG MGGLPWIIMS EIFPMNVKVS AGTLVTLANW SFGWIVAFAY 420
  421 NFMLEWNASG TFLIFFTICG AGIVFIYAMV PETKGRTLED IQASLTDFLQ